Safety Issue - IF I read this thread correctly, it sounds like you've solved the shore power ELCI issue. But you need to ensure that the boat ground is still intact for safety.
A safely wired boat, ELCI issues aside, should always have the neutral and ground for shore power independent from each other. There are typically three conductors of interest in a boats AC system, black, white and green. The neutral (white) should only be connected to ground at the utility connection, on shore, back at the marina breaker box. So it sounds as if you have resolved that issue. However, you may have an open ground, depending on how the boat is really wired. If "lifting" the ground from the power meter opened the only connection to ground that you have, there could be a safety issue. The boats green AC wire need to be connected to a solid ground to ensure safety, this should be through the green conductor in the shore power cord.
The ground on the boat AC should be able to conduct any faults (read "current that can hurt you") safely to ground at the utility connection. If open, YOU can become the path to ground, and my personal experience is that is not good, and can even be very bad.