Update on this topic. In spite of having the updated ECM, my engine has continued to have intermittent episodes of starting difficulty. The only seeming consistency has been that the longer it has been shut down the more difficult it is to start. In spite of spinning (apparently) fine, it doesn't like to start. Well if a diesel spins and gets fuel and air, it has to run. The only way to shut one down is to deprive it of fuel. So I assumed that my fuel system has been draining down, therefore the longer it's been down, the more drain down, the harder to start. Seemed logical.
While perusing the engine manual prior to commissioning this spring, I skimmed through some of the descriptions of the control system. During the start sequence, the ECM monitors various parameters and when it is satisfied it electronically opens the injectors to start the engine. Two of the parameters monitored are crank rpm and fuel pressure. Well clearly if the fuel system is draining down then fuel pressure could be the issue. But I've had no evident fuel leaks and the priming pump firms up after just a couple of strokes. Nothing to really indicate air ingress. A mystery...
But another little tidbit that I noticed while flipping through the manual was the recommended specs for the starting battery, namely a minimum of 850CCA. The battery installed in my boat by the previous owner, though brand new, is a "marine dual purpose" with 650CCA. Hmmmm. Keep in mind that computers are binary. If a value of x is required, x minus 0.00001 is a fail. Maybe fuel isn't the problem at all. Maybe the engine just isn't spinning fast enough to satisfy the ECM. So with all batteries fully charged, I closed the parallel switch with the house batteries. After months of being shut down over the winter, the engine started on the third try (last season after about eight tries I finally used starting fluid to get it going). Subsequent starts with the batteries in parallel fired off on the first try every time, regardless of whether down for 3 hours or 3 days. Voila.
Unfortunately, when out on the water and no generator, with typical usage it wouldn't be prudent to rely on the house bank for starting assist in the mornings. But rather than simply replacing the starting batt with one that has better starting characteristics, I added another and now have a parallel bank for starting. Problem solved. A couple dozen starts later it hasn't skipped a beat.
As I read all of the history described on this issue there seemed to be a lot of variability with this problem. I suspect that battery choice, battery health/maintenance, condition of electrical connections, etc. are some of the more variable aspects on these (and all) boats. Just sayin'....